Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015824860.1_cds_XP_016502102.1_15775
CDS Infomation

[gene=LOC107820355] [db_xref=GeneID:107820355] [protein=DNA-directed RNA polymerase II subunit 1] [partial=3'] [protein_id=XP_016502102.1] [location=complement(join(<7..2661,2744..3002,3345..3631,3725..4060,4143..4284,4393..4613,4713..4874,4962..5120,5202..5501,6229..6492,6593..6676))] [gbkey=CDS]
Sequence

ATGGATTTGCGCTTCCCTTTCTCGCCGGCGGAGGTTGCCAAAGTCCGCGTGGTCCAGTTC
GGCATAGTCAGCCCCGACGAAATTAGACAAATGTCAGTGGTGCACATTGAGCATGGTGAG
ACTACGGAGAGAGGGAAACCAAAGCCTGGAGGTTTGAGCGATCCTCGACTCGGGACAATT
GATCGAAAGATGAAGTGCGAGACGTGTATGGCGAACATGGCAGAGTGTCCAGGGCATTTT
GGTCACCTTGAGCTAGCAAAACCTATGTTTCATATCGGATTTATGAAACCTGTACTTAGT
ATCCTTCGCTGCGTCTGCTTCAACTGCTCGAAAATTCTGGCAGATGAGGACGATCCTAAA
TTCAAGCAAGCCATGAGAATAAGGAATCCTAAAAACAGGCTGAAAAAGATGCTGGATGCT
TGCAAAAATAAAACAAAGTGCGAAGGAGGGGACGAAATTGATGTTCGAGGTGAAGAGCCT
GAAGCACCTGTCAAGAAGAGTAGAGGTGGCTGTGGTGCACAGCAGCCAAAAATTTCAATA
GATGGCATGAAAATGGTTGCTGAATATAAGCTTCAGAAGAAAAAGAGTGATGACCCAGAG
CAGATGCCAGAACCAGTTGAAAGGAAACAACAGCTCTCTGCTGAAAGGGTGCTGAGCATT
CTGAAGAGGGTAAGTGACGAAGATTGTCTGTTGCTTGGCCTAAACCCCGAGTATGCTCGC
CCAGATTGGATGATTCTTCAAGTGCTTCCTATACCACCACCACCTGTTCGACCTTCTGTA
ATGATGGATACTTCGTCAAGGAGTGAGGATGATTTAACACATCAACTGGCCATGATTATT
CGTCACAACGAGAATTTGAAGAGGCAGGAAAGGAATGGGGCACCGGCACACATCATTTCA
GAGTTCGCACAGTTATTGCAATTTCATATAGCTACATATTTTGACAATGATCTGCCGGGA
CAACCAAGAGCTACGCAAAGATCAGGTAGACCTATTAAATCAATATGTAGTAGATTAAAA
TCAAAAGAAGGTCGGATCAGAGGCAATCTGATGGGCAAAAGAGTAGACTTTTCTGCTCGA
ACAGTTATTACTCCTGATCCAACTATTAACATTGATCAATTGGGAGTCCCGTGGAGTATT
GCTCTGAATCTCACTTATCCAGAAACAGTGACACCATATAACATTGAAAGGTTAAAGGAG
CTTGTTGAATATGGACCTCATCCACCTCCTGGTAAAACTGGGGCAAAGTATATAATTAGG
GATGACGGCCAAAGGCTTGATCTCCGATACTTGAAGAAGAGCAGCGATCAGCATCTTGAG
CTTGGATATAAGGTTGAGAGGCACTTAAATGATGGGGACTTTGTTCTCTTCAATCGGCAA
CCCAGTCTACACAAAATGTCTATTATGGGGCATAGAATCAAGATCATGCCATACTCAACC
TTCCGGTTGAATTTATCTGTTACTTCTCCTTACAATGCTGATTTTGATGGTGACGAAATG
AACATGCATGTTCCCCAGTCTTTTGAAACCAGAGCAGAAGTGCTGGAGCTTATGATGGTC
CCTAAGTGTATTGTTTCACCCCAGGCAAATAGGCCTGTAATGGGTATCGTGCAGGATACC
CTTTTAGGTTGCCGAAAAATCACTAAAAGAGATACCTTTATAGAAAAGGATGTCTTTATG
AACATTTTAATGTGGTGGGAGGATTTTGACGGGAAAGTACCCGCGCCGGCCATTCTGAAA
CCAAGGCCACTTTGGACCGGGAAGCAAGTGTTTAACCTCATCATACCGAAACAAATAAAT
CTTCTACGATATTCCGCGTGGCATAATGATTCAGAAAAAGGACCCATAACTCCAGGAGAT
ACTCAAGTTAGAATAGAGAAAGGGGAGTTGCTAACTGGTACACTTTGCAAAAAGACCCTT
GGGACGTCCACTGGAAGTCTGATTCATGTTATATGGGAGGAGGTCGGGCCAGATGCTGCT
CGTAAGTTTCTGGGACATACACAATGGCTGGTTAATTATTGGCTTCTTCAGAATGCTTTT
AGCATTGGGATAGGAGACACAATTGCTGATGCTTCAACCATGGAGAAAATTAATGAAACT
ATCTCGAATGCAAAAAGCAAAGTCAAAGAACTTATCAAAGCTGCTCAAGAGAAGCAGTTA
GAAGCTGAACCAGGGAGAACTATGATGGAATCATTCGAGAACAGAGTGAACCAGGTGTTG
AATAAAGCTCGTGATGATGCGGGAAGCAGTGCCGAGAAGAGTTTATCAGAAAGCAACAAT
CTTAAAGCTATGGTTACTGCTGGGTCCAAGGGAAGTTTTATTAACATATCTCAAATGACT
GCTTGTGTGGGGCAACAGAATGTTGAAGGGAAACGTATTCCTTTTGGGTTCATAGACCGT
ACTCTACCTCATTTTACCAAGGATGATTATGGTCCAGAAAGTCGTGGTTTTGTGGAGAAT
TCATATCTCCGGGGACTGACCCCGCAGGAGTTCTTCTTTCATGCTATGGGTGGTAGAGAA
GGTCTAATTGATACTGCTGTGAAAACTTCTGAGACTGGGTACATCCAGAGGCGATTAGTG
AAGGCCATGGAGGATATCATGGTCAAGTATGATGGTACTGTTAGGAATTCATTGGGTGAT
GTTATCCAGTTTCTGTATGGGGAAGATGGCATGGATGCTGTTTGGATTGAGACGCAGAAG
TTGGATTCTCTGAAAGCAAAGAAATCAACATTCGATGACCTGTATGCATATGAGATCGAT
GATCCTAACTGGAACCCAAGTTACATGTTGCCAGAAGCTATCGAAGATCTAAAAACTATT
CGGGAGATTCGTAGTGTGTTTGATGCAGAGGTTCAGAAACTTCAAGCTGATAGAAAACAG
CTTGGGACAGAGATTGCTGTAACAGGTGACAATTCTTGGCCGCTTCCTGTTAACATTCAG
AGGCTTGTCTTGAATGCCCAAAAGACATTTAAGATAGATTTTCGAAGGCGGTCTGATATG
CATCCTATGGAGATTGTGGAAGCTGTTGATAAGTTACAGGAGAGGCTTAAGGTTGTCCCT
GGCGATGATTACCTAAGCATGGAAGCTCAGAAGAATGCTACTCTTTTCTTCAATATCTTG
CTCCGTAGTGCCTTGGCTAGTAAAAGGGTTCTGAAGGAGTATAGACTTAGTCGGGAGGCT
TTTGACTGGGTAATTGGTGAGATAGAGTCTCGCTTCTTGCAATCCCTTGTGGCACCAGGA
GAGATGATTGGCTGTGTCGCTGCACAGTCAATTGGTGAGCCTGCCACACAGATGACTCTT
AATACATTTCATTATGCTGGTGTGAGTGCTAAGAATGTTACTCTGGGTGTGCCAAGGTTG
AGGGAGATCATCAATGTTGCCAAGAAAATCAAAACACCCTCTCTATCTGTGTACTTGAAA
CCTGAAGTAGGCAAAACAAAAGAGAGGGCCAAGACTGTCCAGTGTGCCTTAGAATATACT
ACTTTGCGGAGCGTAACACAAGCCACAGAAGTGTGGTATGATCCAGACCCCATGAGCACC
CTCATTGAGGAGGATGTTGAATTCGTCAAGTCATATTATGAAATGCCAGATGAAGAGATC
GACCCTGACAAAATCTCTCCATGGTTGCTTCGCATAGAGTTAAATCGTGAAATGATGGTG
GATAAGAAACTTAGCATGGCTGACATTGCTGAAAAGATCAACCTTGAATTTGATGATGAC
TTGACCTGCATCTTTAATGATGATAATGCCGAAAAGCTGATCCTTCGAATTCGTATTATG
AATGATGAAGCTCCAAAAGGTGAACTGGATGAATCTGCTGAGGATGATGTCTTCCTTAAG
AAGATTGAGAGTAATATGCTTACAGAGATGGCTCTCAGGGGAATTCCAGATATTAATAAG
GTGTTCATAAAGAATAGTAAGGTACAGAAGTTTGATGACAATGAAGGATTTAAAGCAGAA
ACTGAATGGATGCTGGACACTGAAGGTGTGAATCTGTTGGCTGTCATGACACATGAAGAT
GTTGATGCAAGTAGAACTACAAGTAACCACTTAATTGAAGTTATTGAAGTTCTTGGAATT
GAGGCAGTCCGAAGATCACTGCTGGATGAGTTGAGGGTCGTCATATCTTTTGATGGGTCC
TATGTGAACTACCGACATCTGGCCATATTGTGTGATACCATGACCTACCGTGGTCATTTA
ATGGCCATCACTCGTCATGGTATTAACCGGAATGACACTGGCCCCATGATGAGATGCTCA
TTTGAGGAGACAGTGGACATCCTTCTTGATGCTGCTGTATTTGCAGAATCAGATTACTTG
AGGGGTGTCACAGAAAATATCATGTTAGGTCAGCTTGCACCAATAGGCACAGGTGGCTGT
GCTTTGTACCTCAATGAGGAGATGTTGAAACAAGCTATTGAGATACCATTGCCTAGCTAC
ATGGAAGGTGGTCTTGAATTTGGCATGACGCCTGGACGTTCACCTATCAGTGGAACCCCA
TATCCTGACGGCATGATGTCTCCAAATTATTTGCTGAGCCCAAATATGCGGATGTCACCC
ATCACAGATGCTCAATTTTCTCCTTATGTGGATAAGATGGCTTTCTCTCCTACTTCGTCC
CCCGGATACAGCCCGTCATCCCCTGGTTACAGCCCATCGTCCCCTGGTTACAGCCCGACG
TCCCCGGGGTACAGCCCCACGTCCCCGGGGTACAGCCCCACGTCCCCCACTTATAGCCCC
AGCTCTCCTGGCTACAGTCCGACAAGTCCAGCATATTCCCCAACCAGTCCATCGTACTCT
CCCACATCACCTAGTTATAGTCCAACATCTCCGAGCTATAGCCCTACATCTCCTAGTTAT
AGCCCAACA

Peptide Sequence

PEP ID

XP_016502102.1
PEP Infomation

PREDICTED: DNA-directed RNA polymerase II subunit 1, partial [Nicotiana tabacum]
Sequence

MDLRFPFSPAEVAKVRVVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK
FKQAMRIRNPKNRLKKMLDACKNKTKCEGGDEIDVRGEEPEAPVKKSRGGCGAQQPKISI
DGMKMVAEYKLQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LLRYSAWHNDSEKGPITPGDTQVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISNAKSKVKELIKAAQEKQL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK
LDSLKAKKSTFDDLYAYEIDDPNWNPSYMLPEAIEDLKTIREIRSVFDAEVQKLQADRKQ
LGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRRSDMHPMEIVEAVDKLQERLKVVP
GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFKAE
TEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGS
YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYL
RGVTENIMLGQLAPIGTGGCALYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGTP
YPDGMMSPNYLLSPNMRMSPITDAQFSPYVDKMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPT

Transcript Sequence

Gene sequence data has not been registered.